PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035326
Common NameLOC102590968
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 380aa    MW: 41043.4 Da    PI: 5.3001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035326genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-1766111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  PGSC0003DMP400035326  66 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 111
                           79******************************.***********985 PP
2Myb_DNA-binding58.21.9e-18118162147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
  PGSC0003DMP400035326 118 RKPFTDEEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 162
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.33261112IPR017930Myb domain
SuperFamilySSF466899.71E-3163159IPR009057Homeodomain-like
SMARTSM007177.1E-1565114IPR001005SANT/Myb domain
PfamPF002499.5E-1766111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2767119IPR009057Homeodomain-like
CDDcd001673.00E-1468110No hitNo description
PROSITE profilePS5129427.88113167IPR017930Myb domain
SMARTSM007178.9E-18117165IPR001005SANT/Myb domain
PfamPF002495.2E-16118162IPR001005SANT/Myb domain
CDDcd001671.04E-13120163No hitNo description
Gene3DG3DSA:1.10.10.604.1E-24120166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MENDTPEVQE VSVAVDGFHG GGIGDASVGG GGGGGVDGGD EEEVLMLEDG SGSSDQLRKK  60
TADRVKGPWS PEEDAILSRL VSNFGARNWS LIARGIPGRS GKSCRLRWCN QLDPAVKRKP  120
FTDEEDRIIL QAHAIHGNKW ASIARLLPGR TDNAIKNHWN STLRRRCAEH GKLRSDSSNI  180
LDDVSAGKSK ASSEETQSCG DVNSLKAIEG KDVSSQENQV ANHYEDRSQE EVQWSDVAND  240
PRTLFRPVAR ISAFSVYGSL NVPESQLQTP RLIPIQAPDL GISKLLEGAF TDRLVPHQCG  300
HGCCGNVNQE INRSSLLGPE FVDYAEPPSF SSHELAALAT EISNVAWYKS GLENSSIEVN  360
FNPTTRAGCG TSHLPSRQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-41631664107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035326
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363093.10.0PREDICTED: transcription factor MYB122
SwissprotQ425756e-94MYB1_ARATH; Transcription factor MYB1
TrEMBLM1BTB90.0M1BTB9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000523950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.13e-96myb domain protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]