PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400035189 | ||||||||
Common Name | LOC102586089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 233aa MW: 25079.1 Da PI: 7.2367 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.8 | 2.3e-39 | 22 | 113 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a+ s+s+++ s + PGSC0003DMP400035189 22 APKRKSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaAAGPSVSQQG-ISVSa 109 789******************************************************************88843333333333.22222 PP TCP 89 ...k 89 + PGSC0003DMP400035189 110 glqQ 113 3321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.1E-32 | 27 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 28 | 82 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEIKDLQIEI AEKDEAKKHQ LAPKRKSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG 60 HKSDGETIQW LLQQAEPSII AATGNGTIPA SALAAAGPSV SQQGISVSAG LQQNMDGSIS 120 NSSSRTSWPM AQLATTGIWP PSAPDVTNFG HNLGTESLQK ISFPVFDLPS TNLSFTSMLG 180 ATNLPGLELG LSQDAHMNSQ SLNQIYQQMG HSRMHQQQQP SPEDDNSQGS GQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400035189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215457 | 1e-131 | AC215457.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0061K08, complete sequence. | |||
GenBank | HG975514 | 1e-131 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338808.2 | 1e-171 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-64 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M1BSZ4 | 1e-170 | M1BSZ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052203 | 1e-171 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-67 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400035189 |
Entrez Gene | 102586089 |