PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035017
Common NameLOC102590121
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 468aa    MW: 51764 Da    PI: 7.5584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035017genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09323370455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400035017 323 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 370
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.84E-10317374No hitNo description
SuperFamilySSF474597.85E-17317389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16319387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6323370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDNDYFSNGG IQPPFHFDPK IPLNSLHSPQ EQNSDYFLNT HWDNNSTDNQ YTHFDSVLSS  60
IVSSPVPSNS VNSNSSLCEL IGKLGSICCS PSTPFTNNCD STRTSCYTTP MNSPPKLHIP  120
IMNQIGKDKL PNLGNSVLMN SPPFPSLSAA KFSGFGSRSF NGRTSQYELN NEESRYGSGT  180
GVMGRGNLTR ISSSPSVVQN KNSSLMMCER LNLGKISGPY EECSVSEQDP SGEIGSKTRY  240
VLNSKKRKAV KSKNYVPIVD ETGKKRAKST EGNGSNNGTV KMEEQKGSED DGAEKEAKEN  300
RKIAEPQKDY IHVRARRGQA TDSHSLAERV RREKISQRMK LLQDLVPGCN KVTGKALMLD  360
EIINYVQSLQ HQVEFLSMKL ASVNPRMDFH IDSLLHKEIS QPSGSLHQHV FLVDGYGENL  420
AQLPTICEDD LQSIVQMGFN QNSNQDLILQ SQTFPVPNSE SHMKIKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352666.10.0PREDICTED: transcription factor bHLH62
TrEMBLM1BSK90.0M1BSK9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000519800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-71bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]