PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034798
Common NameLOC102586398
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 259aa    MW: 29736.9 Da    PI: 4.6309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034798genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd+ll++++k+ G ++W++ ++  g+ R++k+c++rw +yl
  PGSC0003DMP400034798 14 RGPWSKEEDDLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                          89******************************99************97 PP

2Myb_DNA-binding43.66.7e-1467110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg++T +E++ ++++++ lG+  W++Ia++++ gRt++++k+ w++
  PGSC0003DMP400034798  67 RGNFTHQEEDTIIKLHQVLGNS-WSAIAARLP-GRTDNEIKNIWHT 110
                           89******************99.*********.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.89961IPR017930Myb domain
SuperFamilySSF466892.88E-2911108IPR009057Homeodomain-like
SMARTSM007173.6E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001673.79E-101661No hitNo description
PROSITE profilePS5129423.17862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2565117IPR009057Homeodomain-like
SMARTSM007176.0E-1266114IPR001005SANT/Myb domain
PfamPF002497.1E-1367110IPR001005SANT/Myb domain
CDDcd001672.75E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRSPCCEKL GLKRGPWSKE EDDLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT DNEIKNIWHT RLKKKMNESQ  120
PQETPDIQSE PENSNVDIHL EEANNSKDNN SEISSPKINT EIQQQPSSSS STSSSSEYSY  180
SNTIATSSES RNQIMSDNLL EVDDDIWSEV VWAPVDDNYL DLSLMEDNYQ INCSFNDNWF  240
WDDLFTRSNE LMLELPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034798
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352742.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LNC92e-74MYB13_ARATH; Transcription factor MYB13
TrEMBLM1BS180.0M1BS18_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-74myb domain protein 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]