PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034791
Common NameLOC102587940
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 478aa    MW: 52903.9 Da    PI: 7.0597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034791genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13331377455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PGSC0003DMP400034791 331 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 377
                           799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-4249227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.66327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-14330381No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17331395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD  60
WTYAIYWQVA KSKSGKSALI WGDGHCREVK IGQGEGGNDS AHQKMMDGNK KKMVLQKIHT  120
CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE  180
HFQSRSYLAK LARFETLVFV PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAI  240
PKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE  300
GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  360
DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIP EIDFHQRQDD AVVRVGCPLN  420
AHPVSRVLKT FQEHQVVPQE SNVSLTENGE LVHTFSIRAP GPAAEDLKEK LTAALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-27325387264Transcription factor MYC2
5gnj_B4e-27325387264Transcription factor MYC2
5gnj_E4e-27325387264Transcription factor MYC2
5gnj_F4e-27325387264Transcription factor MYC2
5gnj_G4e-27325387264Transcription factor MYC2
5gnj_I4e-27325387264Transcription factor MYC2
5gnj_M4e-27325387264Transcription factor MYC2
5gnj_N4e-27325387264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312320RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034791
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352746.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLM1BS130.0M1BS13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516720.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-167bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]