PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400034788 | ||||||||
Common Name | LOC102587940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 478aa MW: 52903.9 Da PI: 7.0597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7e-13 | 331 | 377 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PGSC0003DMP400034788 331 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 377 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.2E-42 | 49 | 227 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.66 | 327 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-18 | 327 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.99E-14 | 330 | 381 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 331 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-10 | 331 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-15 | 333 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD 60 WTYAIYWQVA KSKSGKSALI WGDGHCREVK IGQGEGGNDS AHQKMMDGNK KKMVLQKIHT 120 CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE 180 HFQSRSYLAK LARFETLVFV PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAI 240 PKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE 300 GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 360 DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIP EIDFHQRQDD AVVRVGCPLN 420 AHPVSRVLKT FQEHQVVPQE SNVSLTENGE LVHTFSIRAP GPAAEDLKEK LTAALSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 4e-27 | 325 | 387 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 320 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400034788 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352746.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | M1BS13 | 0.0 | M1BS13_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051672 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6669 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-167 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400034788 |
Entrez Gene | 102587940 |
Publications ? help Back to Top | |||
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