PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400034714 | ||||||||
Common Name | LOC107062569 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28106.5 Da PI: 6.313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.7e-14 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++ +d++ q+ +W+ ++ g+ Rt+k+c++rw +yl PGSC0003DMP400034714 6 KGAWSPEEDQKMIDYIMQYRIWNWSHMPKFAGLSRTGKSCRLRWINYL 53 79*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+++ eE e+ + + lG++ W++Ia++++ gRt++++k++++++l PGSC0003DMP400034714 59 KGPFSMEEVEIVFRMYQSLGNK-WSAIAKELP-GRTDNEIKNFYHTHL 104 799*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.744 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-26 | 4 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-10 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-12 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-21 | 7 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.97E-7 | 8 | 53 | No hit | No description |
PROSITE profile | PS51294 | 15.894 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-12 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 60 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDYVKKGAWS PEEDQKMIDY IMQYRIWNWS HMPKFAGLSR TGKSCRLRWI NYLKPDLKKG 60 PFSMEEVEIV FRMYQSLGNK WSAIAKELPG RTDNEIKNFY HTHLKKHHGR KDEVKPKSRK 120 KAKQLEMSNQ KKPLITTCPN IEGPNDQSLD FTNSSSSSSY ITFDENYEIL ETSNQDNDVT 180 SIVNQVHDDD NIVILESNPE SSTSSSSSSV DLHINDFMDV SVHSSNVVDF WLELYLAADN 240 LKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 6 | 106 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400034714 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-158 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-158 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168843.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | M1BRU6 | 0.0 | M1BRU6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051510 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-45 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400034714 |
Entrez Gene | 107062569 |
Publications ? help Back to Top | |||
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