PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034226
Common NameLOC102602417
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 397aa    MW: 44644.7 Da    PI: 7.2135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034226genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-21156205255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+++++g
  PGSC0003DMP400034226 156 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEGAARAYDEAALRFRG 205
                           7********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-13156205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32156214IPR001471AP2/ERF domain
SMARTSM003804.0E-37156219IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-22156214IPR016177DNA-binding domain
PROSITE profilePS5103225.488156213IPR001471AP2/ERF domain
PRINTSPR003671.8E-11157168IPR001471AP2/ERF domain
CDDcd000185.32E-29164215No hitNo description
PRINTSPR003671.8E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MCNIIHYKVA NSNDNRRRRS TRQDDEQEIN VFDTMFRGNI NREEEMSVMV SALTHVVAGH  60
HPENVENHHQ NNTSSSRGVG EKRGRDEEQL LLLHGTNSSH MTLSSGGEGT SIRPITSSTP  120
TTEATFIYTT STNNVHQNSS TIDQSNNTND NQLRRRYRGV RQRPWGKWAA EIRDPYKAAR  180
VWLGTFDTAE GAARAYDEAA LRFRGSKAKL NFPENVRLLP SSIQQPPNTL YSVSSEPDPI  240
VHTSSLYHSN FIGHSSRDVE PIVPTSSLDR SSFIIEYSSR DEKPIVHTSS LYRSNFIIGH  300
SSRDVEPIVH TNRSNFTEHS TRDVEPIVQS SSLYRSNFIE RIPRNDPIVY QMVQQGAYFP  360
YFQAGSTSQS TSGSDFHQAT NSSNWSNHDH PSSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24155216163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034226
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-100HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357342.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF83e-34ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLM1BQQ20.0M1BQQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000507180.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-26ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  5. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  6. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]