PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034159
Common NameLOC102605413
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 520aa    MW: 56384.9 Da    PI: 4.9837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034159genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09331379355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400034159 331 NSHSLAERIRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 379
                           58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-10326383No hitNo description
SuperFamilySSF474594.06E-17326396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.466328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17329395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-7331379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDIEIKNDSE PEKGNDQEVS MNYQSPNISS EWQLNGSNLT NSSMGMVDSF CPTTWDQPTT  60
NSSNLGFCDA SVQMDLGPFR AGVDRTLGPN WTPSNAMLKG GMFLPPVPMM LPQSLAQFPA  120
DSGFIERAAR FSCFSGGNFG DMMNPFSIPE SSMNPYYKGL TPMQGPQEVL ASNGLKSPQK  180
LQHLSNVAES SKDVSLTVAR RDTERSPLKN EKKSENFAKS QDEAKEVAGV SSSESDEAGC  240
SGLQEEMDGA GEESCGKNIG SKKRKRGGQD TEPDQMKGAQ QPPPEIQKGE QNLNSIASKP  300
GGKNGKQGSQ FSDPTKEEYI HVRARRGQAT NSHSLAERIR REKISERMKY LQDLVPGCNK  360
VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRLDFDI DSLLAKDILQ SRAGPSSSLA  420
FPPDMTLAYP PLHPPQAGML QSSLPGYGFP SEAFRRAINP HLATTSCGPG DYKDPSSQAP  480
NEWDNELHNV VQMGLNSSVP SSSQDLSGSL PSGQMKAEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348631.10.0PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBLM1BQK60.0M1BQK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505850.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-106bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]