PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400034158 | ||||||||
Common Name | LOC102605413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 56513.1 Da PI: 4.9837 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 332 | 380 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PGSC0003DMP400034158 332 NSHSLAERIRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 380 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 327 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-10 | 327 | 384 | No hit | No description |
PROSITE profile | PS50888 | 15.466 | 329 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-17 | 330 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-7 | 332 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-10 | 335 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MDIEIKNDSE PEKGNDQEVS MNYQSPNISS EWQLNGSNLT NSSMGMVDSF CPTTWDQPTT 60 NSSNLGFCDA SVQMDLGPFR AGVDRTLGPN WTPSNAMLKG GMFLPPVPMM LPQSLAQFPA 120 DSGFIERAAR FSCFSGGNFG DMMNPFSIPE SSMNPYYKGL TPMQGPQEVL ASNGLKSPQK 180 LQHLSNVAES SKDVSLTVAR RDTERSPLKN EKKSENFAKS QDEAKEVAGV SSSESDEAGC 240 SGLQEEMDGA GEESCGKNIG SKKRKRGGQQ DTEPDQMKGA QQPPPEIQKG EQNLNSIASK 300 PGGKNGKQGS QFSDPTKEEY IHVRARRGQA TNSHSLAERI RREKISERMK YLQDLVPGCN 360 KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLDFD IDSLLAKDIL QSRAGPSSSL 420 AFPPDMTLAY PPLHPPQAGM LQSSLPGYGF PSEAFRRAIN PHLATTSCGP GDYKDPSSQA 480 PNEWDNELHN VVQMGLNSSV PSSSQDLSGS LPSGQMKAEP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400034158 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348630.1 | 0.0 | PREDICTED: transcription factor bHLH49-like isoform X1 | ||||
TrEMBL | M1BQK5 | 0.0 | M1BQK5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050585 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2871 | 21 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 1e-106 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400034158 |
Entrez Gene | 102605413 |
Publications ? help Back to Top | |||
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