PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034149
Common NameLOC102580859
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 320aa    MW: 35728.3 Da    PI: 4.8915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034149genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-154493255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          r +h+  E+rRR++iN++f+ Lr l+P+     ++K + a+ L ++++Y+++Lq
  PGSC0003DMP400034149 44 RSKHSVTEQRRRSKINERFQMLRNLIPHT----DQKRDTASFLFEVIQYVQYLQ 93
                          899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-2240114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4214292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-144497No hitNo description
SMARTSM003535.5E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKSGKGHHVE EEEDEYDFGS NRDATPSSNS TKDGKNSDKA NAIRSKHSVT EQRRRSKINE  60
RFQMLRNLIP HTDQKRDTAS FLFEVIQYVQ YLQDTVQKYE GSYQPWSSEP TKLMPWRNSQ  120
WHAQSFPANP QALINGTDTG PTYSGRFDEN LLTVTSSMQA NQRNPLESHP AGDVKSMDQE  180
KELARMAIAT SMPLQASMPV PFQNDSAFSD SLPTPASDEC PSTTNALNNQ EFMVEGGTIN  240
FSNTYSQGLL NSLTQALQAT GLDLSQASIS VQINLGKRTN KDAKDTENPP PAPGDQFMEE  300
FRDINNDEEL DPAQKRLKK*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034149
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348644.10.0PREDICTED: transcription factor BIM2-like isoform X2
SwissprotQ9CAA42e-89BIM2_ARATH; Transcription factor BIM2
TrEMBLM1BQJ60.0M1BQJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505720.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-92BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]