PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400033935

Common Name

LOC102597615

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 397aa MW: 43031.2 Da PI: 8.6009

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400033935	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	50	110	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s PGSC0003DMP400033935 50 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 110 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	32	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	52	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MEESDNLKSP SENKTKTHTV DDDSPRVKSS KTEDDQNDAS NTQQKTLKKP DKILPCPRCN 60 SMDTKFCYYN NYNVNQPRHF CKSCQRYWTA GGTMRNVPVG AGRRKNKNSA SHCRHIMISE 120 ALEAARIDPP TGFHHPAFKP NGTVLSFGPD LPLCDSMASV LNLAENNTPN GIRNGFYRRE 180 HKNPSGIGGE NGDDCSSGSS VTTSNSMAEG VKNRPPEAVM HTINAFPSPV PCLPGVPWPI 240 PYAAVPFPAI TPAGYPVPFC PPPYWNCNVP GPWSLPWLTP PSPTANQKGS SSAPNSPLGK 300 HSRDGELLKP NNPEGQKNSE GSVLIPKTLR IDDPDEAAKS SIWSTLGIKY DSVSRGGLFK 360 ALQPKSSEKD HPATTSPALQ ANPAAFSRSL SFQERV*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MEESDNLKSP SENKTKTHTV DDDSPRVKSS KTEDDQNDAS NTQQKTLKKP DKILPCPRCN  60
SMDTKFCYYN NYNVNQPRHF CKSCQRYWTA GGTMRNVPVG AGRRKNKNSA SHCRHIMISE  120
ALEAARIDPP TGFHHPAFKP NGTVLSFGPD LPLCDSMASV LNLAENNTPN GIRNGFYRRE  180
HKNPSGIGGE NGDDCSSGSS VTTSNSMAEG VKNRPPEAVM HTINAFPSPV PCLPGVPWPI  240
PYAAVPFPAI TPAGYPVPFC PPPYWNCNVP GPWSLPWLTP PSPTANQKGS SSAPNSPLGK  300
HSRDGELLKP NNPEGQKNSE GSVLIPKTLR IDDPDEAAKS SIWSTLGIKY DSVSRGGLFK  360
ALQPKSSEKD HPATTSPALQ ANPAAFSRSL SFQERV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400033935

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364590.1	0.0	PREDICTED: cyclic dof factor 1-like
Swissprot	Q8LFV3	1e-98	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	M1BQ21	0.0	M1BQ21_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	9e-91	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400033935
Entrez Gene	102597615

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]