PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20944.2 Da PI: 9.931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.8 | 6.1e-55 | 20 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd PGSC0003DMP400033928 20 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKD 107 79*************************999.88***************98999************************************ PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ +++lvg+kktLvfykgrap+gekt+Wv heyrle PGSC0003DMP400033928 108 KEIFR-GRSLVGMKKTLVFYKGRAPRGEKTNWVTHEYRLE 146 *****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-58 | 9 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.815 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-28 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MENFSGTVKM DDQQQQQMEL PPGFRFHPTD EELITHYLSK KVVDMNFSAI AIGDVDMNKI 60 EPWELPWKAK IGEKEWYFFC VRDKKYPTGL RTNRATAAGY WKATGKDKEI FRGRSLVGMK 120 KTLVFYKGRA PRGEKTNWVT HEYRLEGRLS LNNLPKTVKV QTLCINPLFY PLFDFKIPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 17 | 145 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 17 | 145 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 17 | 145 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 17 | 145 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 17 | 145 | 17 | 145 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 17 | 145 | 14 | 142 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 17 | 145 | 14 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033928 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-157 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364584.1 | 1e-115 | PREDICTED: NAC domain-containing protein 100 | ||||
Swissprot | Q9FLR3 | 1e-90 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | M1BQ13 | 1e-132 | M1BQ13_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050262 | 1e-115 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 4e-93 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033928 |
Publications ? help Back to Top | |||
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