PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033608
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 361aa    MW: 41480.6 Da    PI: 5.122
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033608genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36401322103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+
  PGSC0003DMP400033608  40 FLTKTYEMVDDSTIDHVVSWNRGGQSFVVWDPHAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGS 119
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++ikr+k++
  PGSC0003DMP400033608 120 KHLLRNIKRRKTS 132
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5936129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3936129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNQLYSVKEE FPGSSSGGGE PPPLTPQPME GLHDIGPPPF LTKTYEMVDD STIDHVVSWN  60
RGGQSFVVWD PHAFSTTLLP RFFKHNNFSS FVRQLNTYGF RKIDPERWEF ANEAFLKGSK  120
HLLRNIKRRK TSNSPTEHGL GPCVELGFDG EVDRLRRDKQ VLMMELVKLR QNQQNTRAYI  180
RSLEVKLQGT ERKQQQMMNF LARAMQNPEF VQQLIHQKGK RIEIEEDITK KRQRPIDHQG  240
PSASTLHVGG FSHFIKSEPL EFGEANGFQV SELEALALEI QGFGRARKDQ QEEYTIEGLE  300
QFVYTDKELD EGFWEELFND EDVSGNEEED VDVLAESEFS SIQRQMKKAA IWINQLLVDS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-243813418125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033608
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349724.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_006349725.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1BPC20.0M1BPC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]