PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033605
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 365aa    MW: 42034.2 Da    PI: 5.5095
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.6e-36401312102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+
  PGSC0003DMP400033605  40 FLTKTYEMVDDSTIDHVVSWNRGGQSFVVWDPHAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGS 119
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++ikr+k+
  PGSC0003DMP400033605 120 KHLLRNIKRRKT 131
                           **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-5936129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-3936129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.6E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNQLYSVKEE FPGSSSGGGE PPPLTPQPME GLHDIGPPPF LTKTYEMVDD STIDHVVSWN  60
RGGQSFVVWD PHAFSTTLLP RFFKHNNFSS FVRQLNTYGF RKIDPERWEF ANEAFLKGSK  120
HLLRNIKRRK TPNSPTEQGL GPCVELGRFG FDGEIDRLRR DKQVLMMELV KLRQNQQNTR  180
AYIRSLEVKL QGTERKQQQM MNFLARAMQN PEFVHQLIHQ KGKRIEIEED ITKKRRRPID  240
HQGPVSTLHV GGSSHYIKSE PLEFGEANGF QVSELEALAL EMQGFGRARK DQQEEYTIEG  300
LEQFGNTDKE LDEGFWEELF NDEDVSGNED REEEDVDVLA ESEFSSFQRR MKKAAIWINQ  360
LLVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-233813127131Heat shock factor protein 1
5d5v_B3e-233813127131Heat shock factor protein 1
5d5v_D3e-233813127131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165188.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_015165190.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X3
RefseqXP_015165191.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X3
SwissprotQ9LUH81e-118HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1BPC10.0M1BPC1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]