PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400033523

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 357aa MW: 39998.6 Da PI: 7.1277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400033523	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.4e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+d PGSC0003DMP400033523 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD 101 79*************************9.89***********7777799******************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl PGSC0003DMP400033523 102 KIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 9999.999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-66	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.413	14	162	IPR003441	NAC domain
Pfam	PF02365	3.5E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPTTKSGSSR LDDWVLCRIY KKNSGGQKPS CSDLQSKDIN 180 HGSSSSSSSQ FDDMLESLPA IEDRYFSLPK VNSIRNFQQD EKLNLQQLGS GNFDWATIAG 240 LNSFPELASG NQVPAPGNQT PVLMNTNQYH NHNNNLNNFN EFFANSTALN FHSEVKFEGG 300 VDQEVESSVR AQRLNSVNPG FFQENSTGFP SSYTNSVPDP FGIRYPTQTV NMGFTG*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLS EPTTKSGSSR LDDWVLCRIY KKNSGGQKPS CSDLQSKDIN  180
HGSSSSSSSQ FDDMLESLPA IEDRYFSLPK VNSIRNFQQD EKLNLQQLGS GNFDWATIAG  240
LNSFPELASG NQVPAPGNQT PVLMNTNQYH NHNNNLNNFN EFFANSTALN FHSEVKFEGG  300
VDQEVESSVR AQRLNSVNPG FFQENSTGFP SSYTNSVPDP FGIRYPTQTV NMGFTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-111	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-111	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-111	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-111	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-111	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-111	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400033523

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081066.1	0.0	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	0.0	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	M1BP49	0.0	M1BP49_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400049665	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-129	NAC family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400033523

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]