PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033522
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 340aa    MW: 38139.7 Da    PI: 8.8842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033522genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-53161431128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelvv+yLkk+v++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d
  PGSC0003DMP400033522  16 LPPGFRFHPTDEELVVHYLKKRVASVPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD 103
                           79****************************.89***************988899*********************************** PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+vl++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  PGSC0003DMP400033522 104 KPVLTAgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143
                           ****9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6510177IPR003441NAC domain
PROSITE profilePS5100562.50116176IPR003441NAC domain
PfamPF023654.7E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MESTDSSTGS HHQPQLPPGF RFHPTDEELV VHYLKKRVAS VPLPVSIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK GVKTNWIMHE YRLADNKTNN KPPGCDLANK KSLRLDDWVL CRIYKKNNTQ  180
RPIDHERDDL NIDMMMGSSS INPSYIPNSM SMPNIFGQPK IPQLKSSNFG TTLLHDQNHD  240
QNLFEGGSQF SSKRPLANLY WNDQDGGASN DNSQSTKRFL TENMEDGLNM NARADEHNGS  300
IVSLLSQLPQ TSSLHQQQVL GSLSDGVFRQ PYSGMNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-7311796168NO APICAL MERISTEM PROTEIN
1ut4_B1e-7311796168NO APICAL MERISTEM PROTEIN
1ut7_A1e-7311796168NO APICAL MERISTEM PROTEIN
1ut7_B1e-7311796168NO APICAL MERISTEM PROTEIN
3swm_A1e-7311799171NAC domain-containing protein 19
3swm_B1e-7311799171NAC domain-containing protein 19
3swm_C1e-7311799171NAC domain-containing protein 19
3swm_D1e-7311799171NAC domain-containing protein 19
3swp_A1e-7311799171NAC domain-containing protein 19
3swp_B1e-7311799171NAC domain-containing protein 19
3swp_C1e-7311799171NAC domain-containing protein 19
3swp_D1e-7311799171NAC domain-containing protein 19
4dul_A1e-7311796168NAC domain-containing protein 19
4dul_B1e-7311796168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033522
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7019870.0JF701987.1 Solanum lycopersicum NAC3 mRNA, complete cds.
GenBankKC1430400.0KC143040.1 Solanum lycopersicum sinor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266277.20.0NAC domain transcription factor
SwissprotQ9LD441e-108NAC56_ARATH; NAC transcription factor 56
TrEMBLM1BP480.0M1BP48_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000496640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-108NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]