PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033472 | ||||||||
Common Name | LOC102603905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25865.3 Da PI: 8.1922 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.9e-11 | 78 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL ll + + +K +K++iL Av+ + +L PGSC0003DMP400033472 78 SKACREKLRRDKLNDKFMELGALLEPG---RPPKTDKSAILVDAVRMVTQL 125 5678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.849 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.71E-8 | 77 | 130 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-12 | 77 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 78 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-13 | 78 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-8 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVSPENTNWL YDYGFEDSSV PDSNFSASAS GFNWPVQNLN GSRNVSSEID GSIGESDYPK 60 ESGSKKRARV ESCAPTSSKA CREKLRRDKL NDKFMELGAL LEPGRPPKTD KSAILVDAVR 120 MVTQLRDEAQ KLKDSNLNLQ EKIKELKVEK TELRDEKQRL KAEKEKLEQQ LKTTSAQPSF 180 LPPAIPSAFA AHGQFPGSKL VPIMSYPGVA MWQFMPPAAV DTSQDHVLRP PVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033472 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU880279 | 0.0 | EU880279.1 Nicotiana tabacum basic helix-loop-helix protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360098.1 | 1e-172 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-111 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M1BP01 | 1e-171 | M1BP01_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049592 | 1e-172 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-99 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033472 |
Entrez Gene | 102603905 |