PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 22800.7 Da PI: 7.4147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.3e-10 | 78 | 122 | 4 | 51 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 ++ rE+ RRd++N++f eL ll + + +K +K++iL Av+ + PGSC0003DMP400033471 78 SKACREKLRRDKLNDKFMELGALLEPG---RPPKTDKSAILVDAVRMV 122 5678**********************8...89*************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.074 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.19E-7 | 77 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-11 | 78 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-8 | 78 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-10 | 79 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-6 | 80 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVSPENTNWL YDYGFEDSSV PDSNFSASAS GFNWPVQNLN GSRNVSSEID GSIGESDYPK 60 ESGSKKRARV ESCAPTSSKA CREKLRRDKL NDKFMELGAL LEPGRPPKTD KSAILVDAVR 120 MVEKTELRDE KQRLKAEKEK LEQQLKTTSA QPSFLPPAIP SAFAAHGQFP GSKLVPIMSY 180 PGVAMWQFMP PAAVDTSQDH VLRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033471 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU880279 | 1e-132 | EU880279.1 Nicotiana tabacum basic helix-loop-helix protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360098.1 | 1e-147 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-90 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M1BP00 | 1e-151 | M1BP00_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049592 | 1e-147 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-78 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033471 |