PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033417
Common NameLOC102581143
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 486aa    MW: 52745.7 Da    PI: 6.5127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033417genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-063744121154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  PGSC0003DMP400033417 374 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 412
                           5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.66E-7355416No hitNo description
PROSITE profilePS5088812.335363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-12373429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-9373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0064374418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAEEFQLGRG NWWESSTSAS STTTSSSRNK FIDSGISSCT MPSASSTTGL SSMASNFVNW  60
PTEIHEDIKV RSENSSMVFS GTDSHKRYTS ESSVGGGGGG GGGMGQGVLS VDDPNLQMMG  120
LGLSSQGLDW NQPFFRSEKS GSGFRSLIQE GLSSNANYQQ EGICHEQDHN NWSTQKIYHG  180
NSDDSSVNDY NKQLFSGHNN NLENSAVPYG SPSNMLQGLL ISDLNSQQQE SNNFSSVSRS  240
LYYNPSYNNQ PNCDVNIPTS SSSSSWSKFP QFLRTSDPSK VVQQWSLSQS PPLSHSQLSH  300
FSGGTPFWNA TSAAAEDVRS GFVPQLPTNP TVDEKPKHTG EVRNISTITK KSSSETSNKR  360
PRNEAPSPLP AFKVRKEKMG DRITALQQLV SPFGKTDTAS VLSEAIEYIK FLHDQVNVLS  420
TPYMKSGASI QHQQSTGDKS NVNPEGGKQD LRSRGLCLVP VSSTFPVTHE TAVDFWTPTF  480
GGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033417
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360115.20.0PREDICTED: transcription factor bHLH123-like
TrEMBLM1BNV30.0M1BNV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000495040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-64bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]