PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033410
Common NameLOC102578160
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 583aa    MW: 64826.3 Da    PI: 6.6392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033410genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.7e-1282125811373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+a+++++l   ++l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y+al+++e +     + l+++++++e++P
  PGSC0003DMP400033410 212 LKQLLIACARALAENNLDDFEKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMHILYEICP 297
                           689******************************************************************9...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l  +g++La + e++++p+
  PGSC0003DMP400033410 298 YLKFGYMAANGAIADACRNENRIHIIDFQIAQGTQWMTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLTLVGKKLAAISEKFNIPV 386
                           *************************************************************999999********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef++ v     d++ ++L+v+pgEalaVn+ l+lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rf eal+yys
  PGSC0003DMP400033410 387 EFHA-VPVFAPDVTRDMLDVRPGEALAVNFPLSLHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFQEALDYYS 474
                           ****.688899****************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s++++l r+++eri+vE+++l+r+ivnv+aceg+er erhe l+kW+ r+ +aGF+++pls+++++ +k+l+r ++ + y++ ee
  PGSC0003DMP400033410 475 AMFESIDVTLERDKKERINVEQHCLARDIVNVIACEGKERAERHELLGKWKLRFAMAGFHQYPLSSYVNSVIKSLMRCYS-ENYTLVEE 562
                           ****************************************************************************9998.55****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                           +g+++lgWk+r L+s+SaW
  PGSC0003DMP400033410 563 DGAMLLGWKKRYLISASAW 581
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.656186563IPR005202Transcription factor GRAS
PfamPF035141.6E-125212581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESHHLYGYG GTDVNLPYSY AMTTTPSIPN RLLGTLKFDS GNSPNSPFAN YNDPGTPTTL  60
SDSLEQHSST ENISGTSPCS NSSRDYNLYF CRPSPSADIR HNSLLVYSGD NSLLQYANHG  120
HNMKRALLQL ETALMGPEEV TTYSPSAGEI QQPQASGQRS GMWHQDGQVS YRIETQPSHV  180
SVFGISGNII QSEKHHKPMV DYPSQGIPFG NLKQLLIACA RALAENNLDD FEKLIAKARS  240
AVSITGDPIQ RLGAYIVEGL VARKEASGTN IYRALRCKEP AGRDLLSYMH ILYEICPYLK  300
FGYMAANGAI ADACRNENRI HIIDFQIAQG TQWMTLLQAL AARPSGAPYV RITGIDDPVS  360
KYARGDGLTL VGKKLAAISE KFNIPVEFHA VPVFAPDVTR DMLDVRPGEA LAVNFPLSLH  420
HTPDESVDVT NPRDELLRMV KSFSPKVVTL VEQESNTNTA PFFPRFQEAL DYYSAMFESI  480
DVTLERDKKE RINVEQHCLA RDIVNVIACE GKERAERHEL LGKWKLRFAM AGFHQYPLSS  540
YVNSVIKSLM RCYSENYTLV EEDGAMLLGW KKRYLISASA WH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-622145826375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033410
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360106.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM1BNU60.0M1BNU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-178GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]