PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033354
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 665aa    MW: 75618.5 Da    PI: 6.7946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033354genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.41.5e-1142906621374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+   +P
  PGSC0003DMP400033354 290 LRSLLINCAQAVAADDCRSATELLKQVRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADFLKAYHLYLASCP 375
                           689*************************************************************999998...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k+s +t N++I +  ++++rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +e++eetg+rL+++A++++vpf
  PGSC0003DMP400033354 376 FRKMSGFTSNKTIIRKSKNATRVHVIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPF 464
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e+++ +ak++e+++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++   +  ++++ F++rf e l ++s
  PGSC0003DMP400033354 465 EYQA-IAKKWETIRLEDLKLEKDEYLVVNCLYRFKNLHDETVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFS 552
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrvee 353
                           alfd+lea++pre  er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +a F++ p++++ +++ a   +r+ + + + +++
  PGSC0003DMP400033354 553 ALFDMLEANVPREFPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEeIMNMAVEKVRTSYHKDFVIDQ 641
                           ****************************************************************98615666777888888888***** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           ++++++lgWk+r+++++S+W+
  PGSC0003DMP400033354 642 DNKWMLLGWKGRTIYALSCWT 662
                           ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.999264641IPR005202Transcription factor GRAS
PfamPF035145.1E-112290662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MLMEEDMEDK THMLQESLEL QAKERSFYEA LGKKYPPSPQ QNLPITDQNG EIPDDYYSGS  60
VYSSTSNVID SSGYLIDPRL VSISNDHNYS YEQGLFICNG AYSSISSSNS INNLVDGFLD  120
SPVSPLHIPD IYNDSHPIWN FRKGVEEARK FLPTNNKLLD NVVINDLLPQ EKRGESGCAA  180
AQVEKRDVGA TSPTGPRGTK NPHRDDRDLL EEEEERSSKQ AAVYTESTVR SDEFDVILLH  240
SMGDGREALT AYRESLKNAR TKPTVQSKGF AVGRGGRGKK QSGKKEVIDL RSLLINCAQA  300
VAADDCRSAT ELLKQVRLHS SPFGDGNQRL AHCFADGLEA RLAGTGSQIY KALVNKRTSA  360
ADFLKAYHLY LASCPFRKMS GFTSNKTIIR KSKNATRVHV IDFGILYGFQ WPTLIQRIAA  420
REGGPPNLRI TGIEFPQPGF RPAERIEETG RRLSDYAKSF NVPFEYQAIA KKWETIRLED  480
LKLEKDEYLV VNCLYRFKNL HDETVLSDSS RTLVLNLIRE INPDIFIHGI VNGAYSAPFF  540
VTRFREVLFH FSALFDMLEA NVPREFPERM LIEREIFGRE ALNVIACEGW ERVERPETYK  600
QWQVRHLRAR FTQTPFEQEE IMNMAVEKVR TSYHKDFVID QDNKWMLLGW KGRTIYALSC  660
WTPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-482796638380Protein SCARECROW
5b3h_A1e-482796637379Protein SCARECROW
5b3h_D1e-482796637379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547810.0AC254781.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-8a7 map 10, complete sequence.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349504.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_015165081.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLM1BNP90.0M1BNP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]