PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033281
Common NameLOC102602609
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 375aa    MW: 40142.6 Da    PI: 9.3915
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033281genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.6e-3785144362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+++kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss
  PGSC0003DMP400033281  85 EATQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 144
                           56789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3468142IPR003851Zinc finger, Dof-type
PfamPF027019.6E-3287142IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.99488142IPR003851Zinc finger, Dof-type
PROSITE patternPS01361090126IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVFSSISAYL DPSNWQQQVG YSIPNPQLLS GLSQPTPPPP LASTTPPPPP PPPPHQPHHV  60
GGGGGSIRPG SMADRARLAN IPMSEATQKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR  120
YWTRGGALRS VPVGGGCRRN KRSSTSSSST TTITSAKSSN NNNTSKSQAT NSGSTSNNNS  180
TFSSPSSAAS LLGLMNPPIH PLRFMSPLGQ LTDQHFTPNE MNYTSISSSS PAPIVMGTNE  240
NMNFQLGMGS NLEQWRLHQQ LVNQFPYNIY GGLDSSLASG SGSASGSGLY PFHQAHYTCN  300
DAGGGGVISQ IRPKVSNPML TQLALMKMED HQDHVASMPR QFLGNENWLS NGGNVNWNEL  360
SASFSSSSTS NNVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349511.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLM1BNI60.0M1BNI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000492880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.19e-45DNA binding with one finger 2.4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]