PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033233
Common NameLOC102588148
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 286aa    MW: 32779.7 Da    PI: 7.8576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033233genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-093277346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          +WTteE + + da +++ ++   +W  +a++++ g+t ++++  ++ 
  PGSC0003DMP400033233 32 KWTTEENKMFEDALALFDKEtpdRWYNVAAMIP-GKTVNDVIKQYRE 77
                          8*****************99*************.********99986 PP
2Myb_DNA-binding45.61.7e-14150194347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PGSC0003DMP400033233 150 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 194
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5392579IPR017877Myb-like domain
SMARTSM007173.7E-102981IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-42979IPR009057Homeodomain-like
SuperFamilySSF466892.83E-123186IPR009057Homeodomain-like
CDDcd001672.88E-73279No hitNo description
PfamPF002492.0E-73278IPR001005SANT/Myb domain
PROSITE profilePS5129418.708143199IPR017930Myb domain
SuperFamilySSF466891.73E-17145198IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17146198IPR006447Myb domain, plants
SMARTSM007173.2E-12147197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12148194IPR009057Homeodomain-like
CDDcd001678.16E-11150195No hitNo description
PfamPF002496.7E-12150194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSREMGFLSP PCEAATYLRN SNWLFEENKG TKWTTEENKM FEDALALFDK ETPDRWYNVA  60
AMIPGKTVND VIKQYRELVD DVTDIEAGLI PVPGYMTTVP STNSFTLDWI NHDQEEGVFH  120
DFNKPFYGPS HGKRNTSNRF SEYERKKGIP WTEEEHRQFL LGLKKYGKGD WRNISRNFVT  180
TRTPTQVASH AQKYFIRQLS GGKDKRRSSI HDITTVNLTD MKSISPENHT SSNSPENSVP  240
SPQKPYNLSN QKADIGFKTY GLKLHEHGMH SVILQGLQFG QYNTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-183098876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349469.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H79e-92DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1BNE70.0M1BNE7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000492090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-109MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]