PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033040 | ||||||||
Common Name | LOC107063503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16910.9 Da PI: 10.4872 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.9e-09 | 87 | 127 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR++i +++ L++l+P +K++ a++L +Av+Y+k L PGSC0003DMP400033040 87 ARHRREKISQKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 127 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.951 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-14 | 79 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.18E-7 | 80 | 126 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-14 | 82 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-12 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-6 | 88 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDLNEITQSI NNIEMIQLLP IHNSSSIDHE PALLPVPSIH ERSSLEMMRE MIFHIAMMQP 60 NKIDPESVKP PKRKNVKISK DPQSVAARHR REKISQKIRI LQRLVPGGTK MDTASMLDEA 120 VHYVKFLKKQ LKLLKQAIAC SNDNNKKG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033040 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233061 | 1e-113 | AC233061.1 Solanum lycopersicum chromosome 9 clone C09HBa0037P10, complete sequence. | |||
GenBank | HG975515 | 1e-113 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170922.1 | 1e-104 | PREDICTED: transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 3e-40 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | M1BMY6 | 1e-103 | M1BMY6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400048857 | 1e-104 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 9e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033040 |
Entrez Gene | 107063503 |
Publications ? help Back to Top | |||
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