PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032990
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 554aa    MW: 60047.3 Da    PI: 6.7093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032990genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16347393455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  PGSC0003DMP400032990 347 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 393
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-21340401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-21341410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-17346397No hitNo description
PfamPF000105.3E-14347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-19349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MNHSVPDFDM DDDYSLPASS GLTRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKSHI  60
GNGSGGGGDA VIPSDQAVGR EIRHVEETTP HHLFMQEDEM ASWLHYPLDD PSFERDLYSD  120
LLYPTPTSTL TTATLPRDNR TSTLEIRPPP PQPSPAAPIG TAPRPPIPPS RRSVTENSNR  180
FQNFGHFSRL PKARLEPGQA NLSKSLRDSA VVDSNVTPIT GQESRVSHVP DNVVPVPSGN  240
VGCSTINGST GTATTSTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP SHKAAPTATA  300
AAADDRKRKG REKDDEGQNE DAEFESPDTK KQARGSTSTK RSRAAEVHNL SERRRRDRIN  360
EKMKALQELI PRCNKTDKAS MLDEAIEYLK SLQLQVQMMS MGCGMVPMMY PGMQPYMPPM  420
GMGMGIGMGM EIGMNRQMVP YPPLLQGAAM QNAAAAAQMG PRFPIPPFHL PPVPVPDPSR  480
MQASSQPDPM LNSLVAHNSN QPRLPTFNDP YQQFFGLQQT QVALPQNQAV EQPSNNKSSS  540
KKEVGNPGNH QSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351356ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350296.10.0PREDICTED: transcription factor PIF1-like
TrEMBLM1BMV10.0M1BMV1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000487560.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-32phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]