PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400032989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 579aa MW: 62943.7 Da PI: 6.888 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 347 | 393 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq PGSC0003DMP400032989 347 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 393 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-21 | 340 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-21 | 341 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 343 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-16 | 346 | 397 | No hit | No description |
Pfam | PF00010 | 5.6E-14 | 347 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-19 | 349 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MNHSVPDFDM DDDYSLPASS GLTRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKSHI 60 GNGSGGGGDA VIPSDQAVGR EIRHVEETTP HHLFMQEDEM ASWLHYPLDD PSFERDLYSD 120 LLYPTPTSTL TTATLPRDNR TSTLEIRPPP PQPSPAAPIG TAPRPPIPPS RRSVTENSNR 180 FQNFGHFSRL PKARLEPGQA NLSKSLRDSA VVDSNVTPIT GQESRVSHVP DNVVPVPSGN 240 VGCSTINGST GTATTSTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP SHKAAPTATA 300 AAADDRKRKG REKDDEGQNE DAEFESPDTK KQARGSTSTK RSRAAEVHNL SERRRRDRIN 360 EKMKALQELI PRCNKTDKAS MLDEAIEYLK SLQLQVQMMS MGCGMVPMMY PGMQPYMPPM 420 GMGMGIGMGM EIGMNRQMVP YPPLLQGAAM QNAAAAAQMG PRFPIPPFHL PPVPVPDPSR 480 MQASSQPDPM LNSLVAHNSN QPRLPTFNDP YQQFFGLQQT QVALPQNQAV EQPSNNKSSS 540 KKEVGNPGNH QSGKITIIVY NICHNVTVLK QQTGEREN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 351 | 356 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400032989 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350296.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
TrEMBL | M1BMV1 | 0.0 | M1BMV1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400048756 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4059 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 3e-32 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400032989 |
Publications ? help Back to Top | |||
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