PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032987
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 501aa    MW: 54142.9 Da    PI: 7.3632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032987genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-16312358455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  PGSC0003DMP400032987 312 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 358
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-21305366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-21306375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-17311362No hitNo description
PfamPF000104.6E-14312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-19314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MELLWQNGQV VMQSQNQRSL KKSHIGNGSG GGGDAVIPSD QAVGREIRHV EETTPHHLFM  60
QEDEMASWLH YPLDDPSFER DLYSDLLYPT PTSTLTTATL PRDNRTSTLE IRPPPPQPSP  120
AAPIGTAPRP PIPPSRRSVT ENSNRFQNFG HFSRLPKARL EPGQANLSKS LRDSAVVDSN  180
VTPITGQESR VSHVPDNVVP VPSGNVGCST INGSTGTATT STAIREPTTT CDISMTSSPG  240
GSGNSVSASA EPPAPSHKAA PTATAAAADD RKRKGREKDD EGQNEDAEFE SPDTKKQARG  300
STSTKRSRAA EVHNLSERRR RDRINEKMKA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ  360
VQMMSMGCGM VPMMYPGMQP YMPPMGMGMG IGMGMEIGMN RQMVPYPPLL QGAAMQNAAA  420
AAQMGPRFPI PPFHLPPVPV PDPSRMQASS QPDPMLNSLV AHNSNQPRLP TFNDPYQQFF  480
GLQQTQVALP QASPSSSTGP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032987
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350296.10.0PREDICTED: transcription factor PIF1-like
TrEMBLM1BMU90.0M1BMU9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000487560.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-32phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]