PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032599
Common NameLOC102595377
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 750aa    MW: 78536.2 Da    PI: 5.5021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032599genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-081256447
                          S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                          WT+eEd+ + +a + + g+   + +Ia+ ++ g++l +++++++ +
  PGSC0003DMP400032599 12 WTKEEDKAFENALAVFSGDsdKFLKIAAAVP-GKSLQEIIDHYNVL 56
                          *******************************.***********976 PP
2Myb_DNA-binding39.71.1e-1297142247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++WT+eE+  ++++ +++G+g+W+ I+r +   Rt+ q+ s+ qky
  PGSC0003DMP400032599  97 LPWTAEEHRSFLQGLAKHGKGDWRGISRNFVFSRTPTQVASHAQKY 142
                           69*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.203161IPR017884SANT domain
SMARTSM007171.3E-5859IPR001005SANT/Myb domain
CDDcd001671.60E-61257No hitNo description
SuperFamilySSF466892.23E-91264IPR009057Homeodomain-like
PROSITE profilePS5129416.43491147IPR017930Myb domain
SuperFamilySSF466891.94E-1593147IPR009057Homeodomain-like
SMARTSM007176.9E-1195145IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.5E-1495145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-1097142IPR009057Homeodomain-like
CDDcd001674.26E-998142No hitNo description
PfamPF002498.1E-1198142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MSLNRTCNSS FWTKEEDKAF ENALAVFSGD SDKFLKIAAA VPGKSLQEII DHYNVLVEDI  60
NDIESGKVPL PKYERMQSSS SCRSRSSGAG VERRKGLPWT AEEHRSFLQG LAKHGKGDWR  120
GISRNFVFSR TPTQVASHAQ KYYSRLNDNN AKRRKSIHDV TSVGAANITE SSQGQKSDEL  180
TGPCGGQSQW PIADYVTEAF DTGMLSLPGP VTNCMTDAIE GPSAVNPEKF PLVAALGSEL  240
NSSFPGVDEF LQSVEDLIIV PAEGTSGVCH GVDTRTSPSL SVQPSVTDGT GMYTHPVSFP  300
DVHEFLQEVE DLISVPAEGT SGACHGIDTR TSPSLSVQPS VTDGTGMYTH PVSFPDVHEF  360
LQEVEDLISV PAEGTSGACH GIDTRTSPSL SLQSSVAGGT RMYAHSVTVL AEGTSGVWCG  420
IDTRTSPSLS LQPSVAGGTR MYPHPVNVLA EGTSGVSHGV DTRTSPSLSL QPSVAGGSRI  480
YPHPVNVPAE GISGASHGVD TRTSPSLSFQ PSVGGGTGMY THPVTVRAEG TSGARRGVDT  540
RTSPSLSLQP SVVGGTGMYT HPIIVPAEGT SGTRRGVDTR TSPSLSLQPS VGGGTGMYTH  600
PVTVLVEGTS GVRCGIDTRT SPSLGLQPSV AGGTGMYTHA VNNVGCDLEE LMTKQLVGAS  660
QVGLTINTAS LPSPNADHIG VHGCSVAKNG FVSTMEAPGG GFSVDSMQIP SIPGHIGGGT  720
YPCWEPSSKD DSIFDLEDLY TDHMFGFHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1412731173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0916270.0AC091627.2 Solanum demissum chromosome 11 clone PGEC513, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340288.10.0PREDICTED: uncharacterized protein LOC102595377 isoform X2
TrEMBLM1BM040.0M1BM04_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000481330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-51MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]