PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032427
Common NameLOC102590234
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 391aa    MW: 43018.6 Da    PI: 8.0441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032427genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-175099255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  PGSC0003DMP400032427 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                          69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-115099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-2950106IPR001471AP2/ERF domain
SMARTSM003804.1E-3350113IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2150107IPR016177DNA-binding domain
PROSITE profilePS5103222.08950107IPR001471AP2/ERF domain
CDDcd000185.55E-3050106No hitNo description
PRINTSPR003672.2E-95162IPR001471AP2/ERF domain
PRINTSPR003672.2E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDLPLQNTT NSTTVNKTRS SCSSNKRSLK DTTTGPSAVR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPP CPTPTQPTST  120
NDALFNIHSS YNSLKSTSPY YHQSSNTLNR PFFHSSSPYG STGRGHVIGS TCQKNNDSLN  180
MLLFRELLSS NSSNNSTASN LNVAGSMNMP NLYEQLPNFM TNRNTSSFCS YLPTSSNTVI  240
PSSSVMTTQV PKFDNTIHFT VNNSSTTAHD SAAGMDFFPF ESSDSGLLEE ALNGFFPKPK  300
PIKSSLPNYS TKGEFCNIFS QQPQQLQQEQ INDGGLNSDF GLLSSSSSLS SFPVDYFPGN  360
LQVSPGDNMM GDIFQYPDLL SIFAAKLQNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1944106871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357626.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLM1BLL20.0M1BLL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000478870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-13ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]