PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032387
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 1021aa    MW: 113386 Da    PI: 4.6767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032387genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-184892348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           WT+eEde+l +av+q+ g++Wk+Ia+++   R++ qc +rwqk+l
  PGSC0003DMP400032387 48 HWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRSDVQCLHRWQKVL 92
                          6****************************9.************986 PP
2Myb_DNA-binding42.11.9e-13125165748
                           HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +Ed++l+ +v+ +G++ W+tIa+++  gR +kqc++rw+++l
  PGSC0003DMP400032387 125 QEDDKLIGLVNIHGPKKWSTIAQELA-GRIGKQCRERWHNHL 165
                           8*************************.*************97 PP
3Myb_DNA-binding50.54.7e-16171213145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + +WT+eE++ l++a++ +G++ W+  +++++ gR+++ +k++w+
  PGSC0003DMP400032387 171 KEAWTQEEELTLIRAHEAHGNK-WAELSKYLP-GRSDNAIKNHWH 213
                           579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4534196IPR017930Myb domain
SuperFamilySSF466894.19E-1742107IPR009057Homeodomain-like
SMARTSM007171.2E-144594IPR001005SANT/Myb domain
PfamPF002492.3E-154892IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1948108IPR009057Homeodomain-like
CDDcd001678.40E-144992No hitNo description
PROSITE profilePS5129412.196110165IPR017930Myb domain
SMARTSM007179.5E-8124167IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-26124212IPR009057Homeodomain-like
CDDcd001673.98E-11124165No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22124173IPR009057Homeodomain-like
PfamPF002491.0E-11125165IPR001005SANT/Myb domain
PROSITE profilePS5129424.04166220IPR017930Myb domain
SMARTSM007171.9E-15170218IPR001005SANT/Myb domain
PfamPF002491.0E-14171213IPR001005SANT/Myb domain
CDDcd001671.23E-11173213No hitNo description
Gene3DG3DSA:1.10.10.602.9E-20174219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MDYQDLPLSQ ATMESDETSN TPSDDISSLQ SARPLHGRTS GPKRRSSHWT PEEDEILRQA  60
VQQFKGKSWK KIAECFKDRS DVQCLHRWQK VLDPELVKGS WSKEAEELVS HVLILANLTL  120
STYAQEDDKL IGLVNIHGPK KWSTIAQELA GRIGKQCRER WHNHLNPAIN KEAWTQEEEL  180
TLIRAHEAHG NKWAELSKYL PGRSDNAIKN HWHSSVKKKR DSYIASGLLA QFPNVNHQNQ  240
SIPSSSVMLQ QTSEDESVHK EGAEVEEFME CSQDSTLAGC PQSASDLGNT FVHIRENGRM  300
SEEIIPEKDA SSSAAPCPTY YTPAFEDVSC SMLKVPSELV DYNSLEQHTF SHDWGNSTGK  360
DWQFNLDDFT EFIQESSGHY MHCLNGNENH DMVTNPLQNA MESGATSNAG NIVEGPYNPN  420
ELFDGSRIEY PEVGIPQCSL SETGVNGCGE PADSLIYQSS NYQIPESGNM APQNCNDLSF  480
DDFEASTHQQ FSVPSHFSSE DRSLVFGIAS DQFHYPLLEN PVQESFRSRC DRFICPSEFG  540
SPSNDNGIDN AVLKDHPDYT KDSSRLEEQK DEGALCYEPP RFPSLDTPFL YCDLKQSGSD  600
TQQEYSPLGI RQLMTTSTDC STPLRLWDSP SRADSPDVIL KSAAKTFTGT PSILKKRQRH  660
LVTPLSEKRC EKKLECDFNQ ESFSNMVTEF PRIDDMFDES ANEKASTEDK ENLHPSSEDG  720
RKETGDGVTG LSSIGNSERQ LDGGGAHYHK ELHSECAGAN DAMGKVKQPP GVLVELSSND  780
MLFSPDRFFT KRDRATSLSI KALGNQYARR LEAASSNQAT VSSSYVVCSP DVLGKRQSGV  840
VIATSMQYTT STALENTTEN SENVFGADTS NTFGETPFKR SIESPSAWKS PWFMDSLMSS  900
PRYDTGLTFE DFAFLMSPGD RSYDAIGLMK QLNEQTAPSI ADARQILGSE TPETILLGRN  960
SKEQKADENC TLLPSNAMSE RRTLDFSECG TPGKGNETTT KFGSNDSVSS PSSYLLKCCR  1020
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-58472197158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-58472197158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032387
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340265.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_006340266.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_015170956.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_015170959.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLM1BLH70.0M1BLH7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000478250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-169myb domain protein 3r-4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]