PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400032249 | ||||||||
Common Name | LOC102585726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25306.1 Da PI: 4.8208 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 26 | 76 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ ++ +e+ +LA++lgL+ rqV +WFqN+Ra++k PGSC0003DMP400032249 26 RFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 76 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.5 | 6.3e-37 | 24 | 114 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +r+++eqvklLE++F+ +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L +l PGSC0003DMP400032249 24 VKRFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSNFDNLNMQFESLKTEKERLLIQL 112 58***********************************************************************************9888 PP HD-ZIP_I/II 92 ke 93 ++ PGSC0003DMP400032249 113 ET 114 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.39 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-16 | 20 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-18 | 24 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 25 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-15 | 26 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.08E-14 | 26 | 79 | No hit | No description |
PRINTS | PR00031 | 7.7E-6 | 49 | 58 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.7E-6 | 58 | 74 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.5E-14 | 78 | 119 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEPELENSEI SNFKKPFKNK CENVKRFTDE QVKLLETMFK LGTKIEPREK LKLARELGLQ 60 PRQVAIWFQN KRARWKSKQL EHEYRILQSN FDNLNMQFES LKTEKERLLI QLETLNDQLE 120 NNNTRGSGSQ DSRDSELQHT SPENGFTELE LKDCSGSRFD HKSINEEDDD TRDKYFTPKE 180 ESELWNLEEL GDNNSLEHWC VGLGSISNSK LWDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400032249 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY368484 | 1e-164 | AY368484.1 Capsicum annuum HD-ZIP (HD-Zip) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350490.1 | 1e-155 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | M1BL44 | 1e-153 | M1BL44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047622 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-41 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400032249 |
Entrez Gene | 102585726 |
Publications ? help Back to Top | |||
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