PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400032248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 149aa MW: 17889.1 Da PI: 10.602 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 26 | 76 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ ++ +e+ +LA++lgL+ rqV +WFqN+Ra++k PGSC0003DMP400032248 26 RFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 76 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.4 | 1.7e-37 | 24 | 112 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +r+++eqvklLE++F+ +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L ++ PGSC0003DMP400032248 24 VKRFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSNFDNLNMQFESLKTEKERLLIQV 112 58**********************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.39 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-16 | 20 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-18 | 24 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 25 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.04E-13 | 26 | 79 | No hit | No description |
Pfam | PF00046 | 5.3E-16 | 26 | 76 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-6 | 49 | 58 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 58 | 74 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.0E-14 | 78 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEPELENSEI SNFKKPFKNK CENVKRFTDE QVKLLETMFK LGTKIEPREK LKLARELGLQ 60 PRQVAIWFQN KRARWKSKQL EHEYRILQSN FDNLNMQFES LKTEKERLLI QVSYLISLVK 120 ILTLLLPRNL WKRINFVLFF FKTVGDIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400032248 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350490.1 | 8e-74 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 3e-37 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | M1BL43 | 1e-101 | M1BL43_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047622 | 3e-73 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-39 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400032248 |
Publications ? help Back to Top | |||
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