PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032184
Common NameLOC102585438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 362aa    MW: 40618.9 Da    PI: 8.6514
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032184genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32176229255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PGSC0003DMP400032184 176 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 229
                           9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15173229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28174229IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-24176229IPR006447Myb domain, plants
PfamPF002496.1E-7177228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MELFPPQPDL SLQISPPNTT TNQEENNIDL SFWKRALESR KPHNININNT SCFDLSLSSN  60
IPRPSSIINH QEPNYPSSQY FQNNTNFINN PFIPHHHNLG LFRPISGVPL YNNHQNSSTN  120
TLPIQSSPSS FNNYNNINHI SSSNSHFHQS HNHHQNGLMR SRFFSRFPTK RSMRAPRMRW  180
TSTLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKSAAGA  240
ASSGQSEVFD TVSSGDNSDD LVLEIKNSNK SELSVQQGRQ NMYNQEKDYG GLWSNSSSRE  300
SWQLHGKLGD YPGNLPSLEK NMEAKCTSYE GISTEVSSSS ITQASPKKLN LDFTLGIPNI  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17177231458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361268.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-79KAN2_ARATH; Probable transcription factor KAN2
TrEMBLM1BKY10.0M1BKY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000475320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-59G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]