PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032125
Common NameLOC102592364
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 335aa    MW: 38145.1 Da    PI: 8.6403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032125genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd++l+  + ++G g+W+  +++ g+ R++k+c++rw +yl
  PGSC0003DMP400032125 14 KGPWTHEEDQKLLSFIDKHGCGSWRGLPAKAGLQRCGKSCRLRWINYL 61
                          79********************************************97 PP
2Myb_DNA-binding46.68e-1567110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++ +E+  +++++++lG++ W++Ia +++  Rt++++k++w++
  PGSC0003DMP400032125  67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 110
                           89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.487961IPR017930Myb domain
SuperFamilySSF466894.69E-2911108IPR009057Homeodomain-like
SMARTSM007175.2E-101363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001675.68E-91661No hitNo description
PROSITE profilePS5129424.12362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2465116IPR009057Homeodomain-like
SMARTSM007179.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.5E-1467110IPR001005SANT/Myb domain
CDDcd001678.58E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRSKCCDEE GLKKGPWTHE EDQKLLSFID KHGCGSWRGL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPNG AGSSKYVANL SHMAEWESAR LEAEARLVRK SKILFNSHNY NINPTTISQQ  180
LPYYQQLPCL DILKAWQMTS TKLPTINDIS HAILLNNSRN KNLESSIPST LNSSENIFAN  240
NVPTTTKVGD DHQNLHNLST INSCFEDDQL QTELPTFMQE FSGVFPEYTQ NSTNGLQMDN  300
IMGSFYGDFE DNKLINWNNF PNYLVNSPIG SPVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1501620.0AC150162.1 Solanum demissum chromosome 5 clone PGEC160O2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355159.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9LE632e-92MY106_ARATH; Transcription factor MYB106
TrEMBLM1BKS80.0M1BKS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000474460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.19e-92myb domain protein 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]