PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032103
Common NameLOC102591369
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 430aa    MW: 47643.7 Da    PI: 7.7734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032103genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-16124169147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  PGSC0003DMP400032103 124 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 169
                           899*****************************.***********996 PP
2Myb_DNA-binding54.72.3e-17176219146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PGSC0003DMP400032103 176 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 219
                           678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413119170IPR017930Myb domain
SMARTSM007172.4E-14123172IPR001005SANT/Myb domain
SuperFamilySSF466891.32E-27124217IPR009057Homeodomain-like
PfamPF002491.6E-15124169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-26125177IPR009057Homeodomain-like
CDDcd001673.26E-13127168No hitNo description
PROSITE profilePS5129426.846171225IPR017930Myb domain
SMARTSM007174.4E-14175223IPR001005SANT/Myb domain
PfamPF002496.0E-14176218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20178224IPR009057Homeodomain-like
CDDcd001673.10E-11178218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPKSLDEGKG RRRGSWDFQF LNKGGSFFSS  60
QSLDEAQNSE ENNGTIDLNA SCFNEENPIT MHSTFNSNNN SSSSGCGGNN GKETENGQSK  120
LCARGHWRPA EDAKLKELVA IYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFS  180
EEEEERLMAA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRKMGQF  240
VYRRSTTTVV EEAENSSGQN SVNHFAGTCS MKMNNDGPNG WVVYGPNGSP HMAASAGEAA  300
ATPSSTNNVP LYSPYSPFCA PPFDSLPAGH CGNEMMNILN QQAGRSWDRQ REITHQHHQH  360
SSNSLMMMNS MQQDQSQYVL QFPYVAQISS SSTEQGLVKE DKRSNNNSDN TTIAPPTPPF  420
IDFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321242247107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankJX5224780.0JX522478.1 Solanum lycopersicum R2R3 MYB gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355156.20.0PREDICTED: myb-like protein Q
TrEMBLM1BKQ60.0M1BKQ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000474150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75myb domain protein 105
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]