PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400032101

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 331aa MW: 37056.8 Da PI: 6.62

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400032101	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl PGSC0003DMP400032101 22 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.224	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-31	20	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-8	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-20	149	196	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MALDQNAQQT KDMNLVLSSD AKPRLKWTPD LHQRFVDAVS QLGGPDKATP KSLMRVMNIH 60 GLTLYHLKSH LQKYRLGKSS VTDQSFDENK QEVKLDLCEI VPNDDDAKGN EISRGLKQRT 120 YFDTELPQSD HKLSLGVCDG SQNQMNESFQ IARALQMQMD VQRKLYQQIE VQRHLQLRIE 180 AQGKYLQSVL RKAQETLAGY GTSSGVELAK AELSQLVSMV NMGCCPSSSL SVITEIDCSI 240 SKDTENKTLK EGILCSIESS LTSSESSARK DICGLSLNQE TKGKKRSRHN ICGDEQSSGK 300 RYLETIDLNR KCPDEYDENV TKVIDLNEYS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400032101

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-128	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355110.2	0.0	PREDICTED: uncharacterized protein LOC102602966
Swissprot	F4I274	7e-74	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	M1BKQ4	0.0	M1BKQ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047413	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	7e-75	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400032101

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]