PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 275aa    MW: 30825.7 Da    PI: 5.9847
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032100genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.29.9e-101203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+++gLtl+h+kSHLQkYRl
  PGSC0003DMP400032100  1 MNIHGLTLYHLKSHLQKYRL 20
                          9******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-8121IPR009057Homeodomain-like
PfamPF143791.1E-2093140IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNIHGLTLYH LKSHLQKYRL GKSSVTDQSF DENKQEVKLD LCEIVPNDDD AKGNEISRGL  60
KQRTYFDTEL PQSDHKLSLG VCDGSQNQMN ESFQIARALQ MQMDVQRKLY QQIEVQRHLQ  120
LRIEAQGKYL QSVLRKAQET LAGYGTSSGV ELAKAELSQL VSMVNMGCCP SSSLSVITEI  180
DCSISKDTEN KTLKEGILCS IESSLTSSES SARKDICGLS LNQETKGKKR SRHNICGDEQ  240
SSGKRYLETI DLNRKCPDEY DENVTKVIDL NEYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-128HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355110.20.0PREDICTED: uncharacterized protein LOC102602966
TrEMBLM1BKQ40.0M1BKQ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000474130.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-46G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]