PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032077
Common NameLOC102592034
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 333aa    MW: 37891.7 Da    PI: 8.4649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032077genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161158148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+  + ++G g+W++ +++ g+ R++k+c++rw +yl
  PGSC0003DMP400032077 11 KGPWTPEEDQKLLSFIDKHGCGSWRALPAKAGLQRCGKSCRLRWINYL 58
                          79********************************************97 PP
2Myb_DNA-binding47.73.5e-1564107146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++ +E+  +++++++lG++ W++Ia++++  Rt++++k++w++
  PGSC0003DMP400032077  64 RGKFSLQEERTIIQLHALLGNR-WSAIAAYLP-SRTDNEIKNYWNS 107
                           89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.679658IPR017930Myb domain
SuperFamilySSF466893.55E-308105IPR009057Homeodomain-like
SMARTSM007171.3E-111060IPR001005SANT/Myb domain
PfamPF002495.9E-161158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241265IPR009057Homeodomain-like
CDDcd001673.24E-101358No hitNo description
PROSITE profilePS5129424.27159113IPR017930Myb domain
SMARTSM007172.3E-1563111IPR001005SANT/Myb domain
PfamPF002491.2E-1464107IPR001005SANT/Myb domain
CDDcd001672.88E-1066109No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2566113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRFDKEGLK KGPWTPEEDQ KLLSFIDKHG CGSWRALPAK AGLQRCGKSC RLRWINYLRP  60
DIKRGKFSLQ EERTIIQLHA LLGNRWSAIA AYLPSRTDNE IKNYWNSRLK KRLTKMGIDP  120
MTHKPNGEGS SKYVANLSHM AEWESARLEA EARLVQKSKI FFNNNNNSHN YNINPSTISQ  180
QLPYYQQLPC LDILKAWQMT STKLPTINDI SHAILRNNSK NKKLDSSIPS STTNIFANNA  240
PTTTKVGDDH QNLHDLSTIN SCFEDDHLQT ELPSFMQEFS GLFPEYTQNS TNGLQVDNTM  300
GSCSGDFEDN KLLINWNDFP NYMVNSPIDC IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2991135108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1501620.0AC150162.1 Solanum demissum chromosome 5 clone PGEC160O2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355158.10.0PREDICTED: transcription factor MYB51-like
SwissprotQ9LE632e-88MY106_ARATH; Transcription factor MYB106
TrEMBLM1BKN10.0M1BKN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000473790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-88myb domain protein 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]