PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032070
Common NameLOC102603307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 361aa    MW: 40200.5 Da    PI: 8.6207
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032070genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.5e-392888262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss
  PGSC0003DMP400032070 28 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 88
                          78999*****************************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272885IPR003851Zinc finger, Dof-type
PfamPF027013.7E-323086IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.53286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MQDADKETLS SKSIEEEDSS EEKALKKPDK LIPCPRCNSM ETKFCYYNNY NVNQPRYFCK  60
NCQRYWTAGG TMRNVPVGSG RRKNKSSSIS NYPLQAGRVE AAAHGMHLPA LRTNGTVLTF  120
GSDKPLCDSM VSALNLAENS HNMNRNEFHG SERRMPAIGN DQSNGTCSTA SSVTDKESSA  180
GTHDLANWNN FQPFPPQVPY FQGAPWPYSG FPVSFYPATP YWGCTVANPW NVPWLSSDQS  240
SVQNNSPTSP TLGKHSRDES KIDPSQSRRR DANLQNREGE RCVLIPKTLR IHDPNEAAKS  300
SIWSTLGIRN EKIDSARGTM LFSAFNPKAD HRNREHDTSF ALQANPAALS RSLHFRESTQ  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2848500.0KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355111.10.0PREDICTED: cyclic dof factor 1 isoform X1
TrEMBLM1BKM30.0M1BKM3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000473700.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-77cycling DOF factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Kloosterman B, et al.
    Naturally occurring allele diversity allows potato cultivation in northern latitudes.
    Nature, 2013. 495(7440): p. 246-50
    [PMID:23467094]