PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400032070 | ||||||||
Common Name | LOC102603307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 361aa MW: 40200.5 Da PI: 8.6207 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.5e-39 | 28 | 88 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss PGSC0003DMP400032070 28 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 88 78999*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 28 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-32 | 30 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.5 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MQDADKETLS SKSIEEEDSS EEKALKKPDK LIPCPRCNSM ETKFCYYNNY NVNQPRYFCK 60 NCQRYWTAGG TMRNVPVGSG RRKNKSSSIS NYPLQAGRVE AAAHGMHLPA LRTNGTVLTF 120 GSDKPLCDSM VSALNLAENS HNMNRNEFHG SERRMPAIGN DQSNGTCSTA SSVTDKESSA 180 GTHDLANWNN FQPFPPQVPY FQGAPWPYSG FPVSFYPATP YWGCTVANPW NVPWLSSDQS 240 SVQNNSPTSP TLGKHSRDES KIDPSQSRRR DANLQNREGE RCVLIPKTLR IHDPNEAAKS 300 SIWSTLGIRN EKIDSARGTM LFSAFNPKAD HRNREHDTSF ALQANPAALS RSLHFRESTQ 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400032070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC284850 | 0.0 | KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355111.1 | 0.0 | PREDICTED: cyclic dof factor 1 isoform X1 | ||||
TrEMBL | M1BKM3 | 0.0 | M1BKM3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047370 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-77 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400032070 |
Entrez Gene | 102603307 |
Publications ? help Back to Top | |||
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