PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400032069

Common Name

LOC102603307

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 443aa MW: 49201.3 Da PI: 6.3763

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400032069	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	110	170	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss PGSC0003DMP400032069 110 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 170 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	110	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MSEVRDPAIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDDKITLEGE FTQSKQDDEL 60 VDPTADSSIE PETSSGISDD IKMQDADKET LSSKSIEEED SSEEKALKKP DKLIPCPRCN 120 SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR 180 VEAAAHGMHL PALRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMNRNEF HGSERRMPAI 240 GNDQSNGTCS TASSVTDKES SAGTHDLANW NNFQPFPPQV PYFQGAPWPY SGFPVSFYPA 300 TPYWGCTVAN PWNVPWLSSD QSSVQNNSPT SPTLGKHSRD ESKIDPSQSR RRDANLQNRE 360 GERCVLIPKT LRIHDPNEAA KSSIWSTLGI RNEKIDSARG TMLFSAFNPK ADHRNREHDT 420 SFALQANPAA LSRSLHFRES TQ*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MSEVRDPAIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDDKITLEGE FTQSKQDDEL  60
VDPTADSSIE PETSSGISDD IKMQDADKET LSSKSIEEED SSEEKALKKP DKLIPCPRCN  120
SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR  180
VEAAAHGMHL PALRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMNRNEF HGSERRMPAI  240
GNDQSNGTCS TASSVTDKES SAGTHDLANW NNFQPFPPQV PYFQGAPWPY SGFPVSFYPA  300
TPYWGCTVAN PWNVPWLSSD QSSVQNNSPT SPTLGKHSRD ESKIDPSQSR RRDANLQNRE  360
GERCVLIPKT LRIHDPNEAA KSSIWSTLGI RNEKIDSARG TMLFSAFNPK ADHRNREHDT  420
SFALQANPAA LSRSLHFRES TQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400032069

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC284850	0.0	KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355111.1	0.0	PREDICTED: cyclic dof factor 1 isoform X1
TrEMBL	M1BKM3	0.0	M1BKM3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047370	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-80	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400032069
Entrez Gene	102603307

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Kloosterman B, et al. Naturally occurring allele diversity allows potato cultivation in northern latitudes. Nature, 2013. 495(7440): p. 246-50 [PMID:23467094]