PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031984
Common NameLOC102599959
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 390aa    MW: 44197.1 Da    PI: 5.114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031984genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18183232255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  PGSC0003DMP400031984 183 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRG 232
                           59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-32182242No hitNo description
SuperFamilySSF541712.03E-22183241IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-32183241IPR001471AP2/ERF domain
PROSITE profilePS5103222.866183240IPR001471AP2/ERF domain
SMARTSM003802.5E-37183246IPR001471AP2/ERF domain
PRINTSPR003676.2E-11184195IPR001471AP2/ERF domain
PfamPF008476.2E-12184232IPR001471AP2/ERF domain
PRINTSPR003676.2E-11206222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAEPEEQMEF DDNTFERQQR RPVFEEASMS NRRFKKIKSP ERQSSVQQPS LNSFVPCNNP  60
TSMPFPPPPS SSRLVFPFAF DGTQQSMDSS SQLGTNAMPL FHPQQQNQQQ MISFSPQQCL  120
YPPYFAGDLG PSQNQQQMLR YWNETLNLSP RGRMMMMSRL GQDSRGIFRP QQVQVQPISA  180
TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA MAYDREAYKL RGDNAKLNFP  240
ELFIGKDKGE PSLSSPIAPH ESSLPEQNSE SLELQPINNE LPPSPPPQPP PEGDNHDKDS  300
GIGSSEVTTN SQSSELVWGD MAEAWFNATG WGPGSPVWDD LDSNNNLMFP PNLHFGNFCQ  360
QEPHNSDPHQ HHDMNSDPSS PSCPMRPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20182240160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357496.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLM1BKF00.0M1BKF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000472650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-53ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]