PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031849
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 709aa    MW: 75826.5 Da    PI: 7.6006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031849genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16454500455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  PGSC0003DMP400031849 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 500
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.37E-17446504No hitNo description
SuperFamilySSF474591.7E-20447512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-20447508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13454500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAIGKLESGQ QKISSTTNLS SFPENDLIEL KWQNGQIVMQ GQSSSAKKST VHNNFQSSAS  60
GDRDKYTGNS STSKIGKFGL MDTMLNDMSL SVPTDELDLI QEDEGVPWLG YPADDSLQQD  120
YCAQLLPEIS GVTANEQSRQ SVFGLINKRG SSDKMIGDSH SVPVHNAVNF EQRNTSKVSP  180
SSRFSPLSSL PSQKGHASIP TLESGVSDIF SSKNSNTPMS VLGDSNQSKA SAGDVKSNKI  240
QKQNMPGNRS NLLNFSHFSR PATFVKAAKL QSSTGGSNVS DSPILEAKGK KGGEKVAIGD  300
NHVSAAATEN YLTSKKDNVP HYPTNGVPSQ LESRPSGASF HDRSCQVEQS DNAFRDCSSN  360
NDNTRDQFTG AKATKDIADG ERNVEHGVAC SSVCSGSSAE RGSSDQPLNL KRKTRDNEES  420
ECRSEDVEEE SVGIKKTCAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKADKASMLD EAIEYLKTLQ LQVQIMSMGT GFCVPPMMFP TGVQHMHGAQ MPHFAPMSLG  540
MGMGMGMGMG FGMGMLEMNG RSSGYPMYPM PSVQGGHFPS PPIPASTAYP GIAVSNRHAY  600
AHPGQGLPMS IPRASLGPLA GQPSTGAAVP MNVARAGVPV EIRSAPPNLD SKTPVHKNSQ  660
IVQNAEASRP QNQTCSQVQA TNEVLEKSAQ KNDQLPDAID SAANRLTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458463ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031849
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358519.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_015169448.10.0PREDICTED: transcription factor PIF3-like
TrEMBLM1BK410.0M1BK41_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000470790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-41phytochrome interacting factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]