PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031557
Common NameLOC102606052
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 326aa    MW: 36999.2 Da    PI: 5.7082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031557genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
  PGSC0003DMP400031557 14 KGLWSPEEDEKLCNYITNFGIGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding46.77.5e-1567110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  PGSC0003DMP400031557  67 RGMFSQDEEDKIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                           788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.406961IPR017930Myb domain
SuperFamilySSF466898.24E-2912108IPR009057Homeodomain-like
SMARTSM007178.7E-101363IPR001005SANT/Myb domain
PfamPF002491.8E-131461IPR001005SANT/Myb domain
CDDcd001671.87E-81761No hitNo description
PROSITE profilePS5129423.61162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PfamPF002499.8E-1467110IPR001005SANT/Myb domain
CDDcd001671.41E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRHSCSVKQ KLRKGLWSPE EDEKLCNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPNTHKPLK ENQVIKDEEN CTNKTSMLQI PPHLNEMANG QFTESKQVFD LLFVPDFQSN  180
SNPSEYNSEV LAQYHDQQSE FENNPNYVFC SASSVTKLEH GQMTETDFGS SSTSRMSSSN  240
SSNMCSNQNT AGIQINGMSE NSEALSWDIE NKMESLFQYP YIGIKNEELK SSPSQERDQL  300
YGNSTSGDFM SNYPLSSLTE EFKWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031557
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344457.10.0PREDICTED: protein ODORANT1-like
TrEMBLM1BJE10.0M1BJE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000466450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-78myb domain protein 86
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]