PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400031503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 526aa MW: 58453.8 Da PI: 7.2898 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 2.9e-30 | 234 | 293 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+ PGSC0003DMP400031503 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCIQDMSILITTYEGTHNHP 293 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-31 | 220 | 295 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-27 | 226 | 295 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.242 | 229 | 295 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 234 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-27 | 235 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MEAVFRKSIH GGVVKQDIKI KAGEEGFVED INDLKVGKER KSVHNEEDNS KSSQQKDLPG 60 DKEDDQLESA KADMEEVREE NQRLKKHLDR IMKDYRNLQM QFHEVAQRDT EKPNNVKHDE 120 AELVSLSLGR TSSDTKKELS KLILSKKEND EKEEDNLTLA LDCKFQSSTK SSPSNLSPEN 180 SLGDVKDDEK GADQTWPPHK VLKTMRNEEE DMVQQNPTKR AKVSVRVRCD TPTMNDGCQW 240 RKYGQKIAKG NPCPRAYYRC TVAPNCPVRK QVQRCIQDMS ILITTYEGTH NHPLPHSATS 300 MAFTTSAAAS MLLSSSSSSG SGPTTSATTT ALNYYLSDNS KPNPFYNLPN SSISQYPTIT 360 LDLTSNSSPS SFPGQHHRTI ASSNNYHSRY NNNNNNNNLS TNILNFSSFE SNHLLPMSWS 420 NGNNQTYHKN QDIHSQSYLQ NNIKSAASAQ TLLPQDTIAA ATKAITSDPK FQSALAVALT 480 SIIGSRGGNH HIDEKSGQNL KVTEPFPVLC SFPSISPGDH KDYTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 234 | 295 | 14 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400031503 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU017421 | 0.0 | GU017421.1 Solanum lycopersicum WRKY72 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344383.1 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 0.0 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | M1BJA0 | 0.0 | M1BJA0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400046570 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1945 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 6e-65 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400031503 |
Publications ? help Back to Top | |||
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