PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031469
Common NameLOC102581505
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 177aa    MW: 20296.8 Da    PI: 5.8868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031469genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-181463356
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          y+GVr +k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+  l+ge
  PGSC0003DMP400031469 14 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAAFHLKGE 63
                          9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-201372IPR016177DNA-binding domain
SMARTSM003807.0E-321378IPR001471AP2/ERF domain
PROSITE profilePS5103222.9061372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-301373IPR001471AP2/ERF domain
PRINTSPR003672.6E-101425IPR001471AP2/ERF domain
CDDcd000189.10E-201474No hitNo description
PfamPF008472.7E-121463IPR001471AP2/ERF domain
PRINTSPR003672.6E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEDDQESKNN IDMYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYETAEMAA AAYDVAAFHL  60
KGERPNLRLN FPELIHTFPK PSSSRPEDVQ MAAHEAAMRF KRPIDDHPDN CGAGPVRVGL  120
SPSQIQAINE SPLDSPKMWM ELAGLLPVRE YTCPSSSFED HQWDEIQYHH DSIWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161477668ATERF1
3gcc_A3e-161477668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363865.11e-131PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ282e-45ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLM1BJ671e-130M1BJ67_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000465161e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.18e-47ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]