PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031126
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 164aa    MW: 18245.4 Da    PI: 5.5413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031126genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19657156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f tae+Aa+a++ a+  l+g+
  PGSC0003DMP400031126  6 SEYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAEMAAAAYDSAAFHLRGH 57
                          569****999.**********8...557*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.83E-23666No hitNo description
SuperFamilySSF541711.63E-22665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-33765IPR001471AP2/ERF domain
SMARTSM003802.7E-35770IPR001471AP2/ERF domain
PROSITE profilePS5103223.064764IPR001471AP2/ERF domain
PfamPF008477.2E-13757IPR001471AP2/ERF domain
PRINTSPR003671.1E-10819IPR001471AP2/ERF domain
PRINTSPR003671.1E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGGITSEYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETA EMAAAAYDSA AFHLRGHAAK  60
LNFPELIGHF PKPASSSPED IRLAAQQAAI TVQNTNIMAS TSHGHEAPVT VGLSPTQIQA  120
INDFPMDSPN MWTTHEDINF TYEMSDYQEM DDCLWDYSST NSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19864360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-19864663ATERF1
3gcc_A3e-19864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363854.11e-121PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I25e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM1BIE71e-120M1BIE7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000459331e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-45ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]