PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400031076 | ||||||||
Common Name | LOC102605294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 25287.7 Da PI: 8.9073 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 55 | 110 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++++ +e++++LA++lgL+ qV vWFqNrRa++k+ PGSC0003DMP400031076 55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110 89****************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 109.6 | 2.3e-35 | 56 | 146 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 k++ ls+eqv+lLE+sF ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++ e+ rLe+ev +++++ PGSC0003DMP400031076 56 KRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDTIIEKYRLEAEVLKMKDQ 144 66778**********************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l PGSC0003DMP400031076 145 LC 146 86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.524 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-19 | 53 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-18 | 53 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.26E-16 | 55 | 112 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 55 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 55 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.4E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.4E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MTGNKVDDQM ELISHFYPQI YSQLAQQQEE TVKPRRRRKR NKVEGRNNTS EVVMRKRKLL 60 SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL 120 KTQHEDTIIE KYRLEAEVLK MKDQLCEAKK KIERLLLERK IDISSNNSPT SSIFSMEQSH 180 FSLGEFGMEG QLMDDSMLFV ADYQSNYVTL WDN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 42 | RRRKRNKV |
2 | 37 | 57 | RKRNKVEGRNNTSEVVMRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400031076 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-149 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366987.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein ATHB-21-like | ||||
Swissprot | Q9ZU70 | 3e-58 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M1BIA9 | 1e-156 | M1BIA9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045855 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-49 | homeobox protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400031076 |
Entrez Gene | 102605294 |
Publications ? help Back to Top | |||
---|---|---|---|
|