PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400031062

Common Name

LOC102604054

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 25064.6 Da PI: 6.5308

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400031062	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.2e-20	53	108	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++++ e++++LA++lgL+ qV vWFqNrRa++k+ PGSC0003DMP400031062 53 RKRKLLSEEQVNLLERSFGDEHKLEMERKAKLASELGLDPHQVAVWFQNRRARWKN 108 89****************************************************95 PP
2	HD-ZIP_I/II	110.1	1.5e-35	54	144	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 k++ ls+eqv+lLE+sF e+kLe erK++la+eLgl+p+qvavWFqnrRAR+k+k++E++y++Lk+++++ e+ rLe+ev +++e+ PGSC0003DMP400031062 54 KRKLLSEEQVNLLERSFGDEHKLEMERKAKLASELGLDPHQVAVWFQNRRARWKNKKIEEEYSKLKTQHETTIIEKYRLETEVLKMKEQ 142 66778**********************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l PGSC0003DMP400031062 143 LC 144 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-17	47	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	49	109	IPR001356	Homeobox domain
SMART	SM00389	2.7E-19	51	113	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-17	53	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.8E-21	53	116	IPR009057	Homeodomain-like
CDD	cd00086	1.46E-15	53	110	No hit	No description
PRINTS	PR00031	5.3E-6	80	89	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.3E-6	89	105	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSSSKVDDQM ELISHFYPHI YAQLAQEQVS LGEKMEPRRR RKKKKSEGEV VMRKRKLLSE 60 EQVNLLERSF GDEHKLEMER KAKLASELGL DPHQVAVWFQ NRRARWKNKK IEEEYSKLKT 120 QHETTIIEKY RLETEVLKMK EQLCEAEMEI QKLLLERKSD ISSNNSPISS IFSMEQQHFD 180 LGEFGMEGKL MDDNMFFVAD NQSTYITLWD N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	44	RRRKKKK
2	38	55	RRRKKKKSEGEVVMRKRK
3	39	44	RRKKKK
4	41	55	KKKKSEGEVVMRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400031062

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-112	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	1e-112	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366983.1	1e-155	PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
Swissprot	Q9ZU70	4e-59	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	M1BI98	1e-154	M1BI98_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400045834	1e-154	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-53	homeobox protein 40

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400031062
Entrez Gene	102604054

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]