PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031052
Common NameLOC102592853
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 297aa    MW: 33899.6 Da    PI: 7.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031052genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-1396147155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r+ h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A++++k+L+
  PGSC0003DMP400031052  96 QRMIHIAVERNRRKQMNDYLTILRSLIPSS---YVQRADQASIIGGAINFVKELE 147
                           6999**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-1293151No hitNo description
SuperFamilySSF474598.51E-1794159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.07295146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1096147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1497159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALETVVYPQ KQYNGYVCKE FYGYEEQESS IILDNNWKYT SSCNYSMMQN QVKLGDCNIV  60
EENSNNMLFL EGSSANSNSL RCCTKKRKRT CNNKDQRMIH IAVERNRRKQ MNDYLTILRS  120
LIPSSYVQRA DQASIIGGAI NFVKELEHNL QTLQAQKTLI SQLEKSDISS SPFFADFFSF  180
PRYSNCSCES SVAVEKSRPL LMSHDIQVNL VESHVNLKIV SKRRPKQLMK IVVGLQCLWL  240
TILHLNVTTV HDQIVLYSIS TKLEEGCQLT TVEEISHAVN QLLDRIQEEE ATSSSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987LRCCTKKRK
28489KKRKRT
396107RMIHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-159HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360298.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLM1BI920.0M1BI92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-66bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]